Working closely with proteomics scientists to understand their current challenges and expectations, we have created Phenyx, the next generation of MS protein characterization software. Phenyx is available in multiple formats and installation configurations to insure its availability to the entire scientific community.

Phenyx is a software platform for the identification and characterization of proteins and peptides from mass spectrometry data. Developed by GeneBio in collaboration with the Swiss Institute of Bioinformatics (SIB) and incorporating the true probabilistic and flexible scoring system OLAV, Phenyx is specifically designed to meet the concurrent demands of high-throughput MS data analysis and dynamic results assessment.
(Further reading on Phenyx...)

Phenyx enable users to 1) submit identification jobs, 2) visualize and evaluate results using various views, 3) manually validate results and compare runs amongst themselves and those of other database search engines, and 4) export results tables into various formats and integrate Phenyx into your laboratory workflow.   More...

Now the integration of Phenyx in proteomics pipelines is optimized via a daemon. The Phenyx Daemon manually and automatically performs batch submissions from any mass spectrometer, including preprocessing steps such as data conversion and peak list filtering.

We invite you to view the Tutorial Movie for a rapid tour of Phenyx.

Begin using Phenyx

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To get started, please go directly to the Phenyx Public Server.

Extend your reach with PMF

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Expand & enhance your protein identification & characterization activities with the Aldente PMF (Peptide Mass Fingerprint) analysis tool. Find out more about Aldente or download the Aldente brochure.